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glue genes documentation
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For New Users

  • Getting Started
  • How-To Guides
    • How do I install glue genes?
    • How do I start glue genes?
    • How do I get my data into glue genes?
    • How do I link my data in glue genes?
    • How do I visualize my data?
    • How do I connect cells and expression data?
    • How do I visualize an expression matrix?
    • How do I link a table of observations and images?
  • User Guide

For Advanced Users/Developers

  • API
    • Input/output
      • glue_genes.glue_genomics_data.bed_factory.read_bed
      • glue_genes.glue_genomics_data.bigwig_factory.read_bigwig
      • glue_genes.glue_single_cell.anndata_factory.read_anndata
      • glue_genes.glue_genomics_data.spaceranger_factory.read_spaceranger_directory
      • glue_genes.glue_genomics_data.geojson_factory.read_geojson
      • glue_genes.glue_genomics_data.openslide_factory.read_open_slide_as_zarr
      • glue_genes.glue_genomics_data.ome_zarr_factory.read_ome_zarr
      • glue_genes.glue_genomics_data.tifffile_factory.read_tifffile_as_zarr
    • Single Cell Data
      • glue_genes.glue_single_cell.data.DataAnnData
      • glue_genes.glue_single_cell.data.DataAnnDataTranslator
    • Imaging Data
      • glue_genes.glue_genomics_data.multires_data.MultiResolutionData
      • glue_genes.glue_genomics_data.multires_data.ReducedResolutionData
    • Custom Viewers
    • Analysis Plugins
      • glue_genes.glue_single_cell.qt.diff_gene_exp.get_gene_diff_exp
      • glue_genes.glue_single_cell.qt.diff_gene_exp.DifferentialGeneExpressionListener
      • glue_genes.glue_single_cell.qt.summarize_gene_subset.do_calculation_over_gene_subset
      • glue_genes.glue_single_cell.qt.summarize_gene_subset.GeneSummaryListener
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How do I?#

Looking to do something specific with glue genes? You’ve come to the right place.

How do I…

Guide

install glue genes?

Installing glue genes

start glue genes?

Stating glue genes

get my data into glue genes?

Loading data

link my datasets?

Linking data

visualize my data?

Visualize data

visualize an expression matrix?

Visualize expression matrix

connect cell and expression data?

Cells to Genes

link observations and images?

Linking observations and images

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How do I install glue genes?
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Getting Started with glue genes
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