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glue genes documentation
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For New Users

  • Getting Started
  • How-To Guides
    • How do I install glue genes?
    • How do I start glue genes?
    • How do I get my data into glue genes?
    • How do I link my data in glue genes?
    • How do I visualize my data?
    • How do I connect cells and expression data?
    • How do I visualize an expression matrix?
    • How do I link a table of observations and images?
  • User Guide

For Advanced Users/Developers

  • API
    • Input/output
      • glue_genes.glue_genomics_data.bed_factory.read_bed
      • glue_genes.glue_genomics_data.bigwig_factory.read_bigwig
      • glue_genes.glue_single_cell.anndata_factory.read_anndata
      • glue_genes.glue_genomics_data.spaceranger_factory.read_spaceranger_directory
      • glue_genes.glue_genomics_data.geojson_factory.read_geojson
      • glue_genes.glue_genomics_data.openslide_factory.read_open_slide_as_zarr
      • glue_genes.glue_genomics_data.ome_zarr_factory.read_ome_zarr
      • glue_genes.glue_genomics_data.tifffile_factory.read_tifffile_as_zarr
    • Single Cell Data
      • glue_genes.glue_single_cell.data.DataAnnData
      • glue_genes.glue_single_cell.data.DataAnnDataTranslator
    • Imaging Data
      • glue_genes.glue_genomics_data.multires_data.MultiResolutionData
      • glue_genes.glue_genomics_data.multires_data.ReducedResolutionData
    • Custom Viewers
    • Analysis Plugins
      • glue_genes.glue_single_cell.qt.diff_gene_exp.get_gene_diff_exp
      • glue_genes.glue_single_cell.qt.diff_gene_exp.DifferentialGeneExpressionListener
      • glue_genes.glue_single_cell.qt.summarize_gene_subset.do_calculation_over_gene_subset
      • glue_genes.glue_single_cell.qt.summarize_gene_subset.GeneSummaryListener
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