Analysis Tools#
Differential Gene Expression#
A menubar plugin to compute differential gene expression for two subsets.
This plugin is normally invoked with a GUI but the core logic can be invoked as get_gene_diff_exp.
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Get differential gene expression for two subsets over a dataset |
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A Listener that updates the differential gene expression SynComponent(s) when the underlying subsets are changed. |
Gene Subset Summary#
Calculate a summary statistic for cells based on genesubset
This menubar plugin in normally invoked through a dialog which not only does the initial calculation and stores the summary is a new component in the target dataset, but sets up a Listener to keep that new component up-to-date when changes are made to the gene subset.
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Calculate a summary statistic for cells based on genesubset |
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A Listener to keep the new components in target_dataset up-to-date with any changes in the genesubset. |
Enrich Gene Subset#
A menubar plugin to do Gene Set Enrichment Analysis on a set of genes.