glue_genes.glue_genomics_data.multires_data.ReducedResolutionData#

class glue_genes.glue_genomics_data.multires_data.ReducedResolutionData(label='', coords=None, parent=None, scale_factor=1, reduced_dims=[], **kwargs)#

A simple data class that represents reduced resolution versions of data in a MultiResolutionData object

Parameters:

parent~.MultiResolutionData: The parent MulitResolutionData that this object is a reducted-resolution version of.
scale_factorint: The scale factor between this data and parent. Currently only a single value, since it must be the same in all dimensions
TODO: Check that any of this works for world coordinate components

__init__(label='', coords=None, parent=None, scale_factor=1, reduced_dims=[], **kwargs)#

Methods

`__init__`([label, coords, parent, ...])
`add_component`(component, label)	Add a new component to this data set.
`add_component_link`(link[, label])	Shortcut method for generating a new `DerivedComponent` from a ComponentLink object, and adding it to a data set.
`add_subset`(subset[, label])	Assign a pre-existing subset to this data object.
`broadcast`(attribute)	Send a `DataUpdateMessage` to the hub
`component_ids`()	Equivalent to `Data.components`
`compute_fixed_resolution_buffer`(args, *kwargs)	Get a fixed-resolution buffer.
`compute_histogram`(cids[, weights, range, ...])	Compute an n-dimensional histogram with regularly spaced bins.
`compute_statistic`(statistic, cid[, ...])	Compute a statistic for the data.
`convert_full_to_reduced_cid`(cid[, downsample])	This translates the full resolution cid to the reduced resolution cid
`convert_reduced_to_full_cid`(cid[, upsample])	This translates the reduced resolution cid to the full resolution cid
`dtype`(cid)	Lookup the dtype for the data associated with a ComponentID
`find_component_id`(label)	Retrieve component_ids associated by label name.
`get_component`(component_id)	Fetch the component corresponding to component_id.
`get_data`(cid[, view])	In the case were we are trying to get a pixel cid from the original dataset we want to return the reduced pixel, otherwise we do the normal thing and we could simplify this logic to call the parent method
`get_kind`(cid)	Get the kind of data for a given component.
`get_mask`(subset_state[, view])
`get_object`([cls])	Get the dataset represented as a non-glue object, using the translation infrastructure.
`get_selection_definition`([subset_id, format])	Get subset state represented as a non-glue object, using the translation infrastructure.
`get_subset_object`([subset_id, cls])	Get a subset represented as a non-glue object, using the translation infrastructure.
`join_on_key`(other, cid, cid_other)	Create an element mapping to another dataset, by joining on values of ComponentIDs in both datasets.
`new_subset`([subset])	Create a new subset, and attach to self.
`register_to_hub`(hub)	Connect to a hub.
`remove_component`(component_id)	Remove a component from a data set
`reorder_components`(component_ids)	Reorder the components using a list of component IDs.
`to_dataframe`([index])	Convert the Data object into a `pandas.DataFrame` object.
`update_components`(mapping)	Change the numerical data associated with some of the Components in this Data object.
`update_id`(old, new)	Reassign a component to a different `glue.core.component_id.ComponentID`
`update_values_from_data`(data)	Replace numerical values in data to match values from another dataset.

Attributes

`components`	All `ComponentIDs` in the Data.
`coordinate_components`	The ComponentIDs associated with a `CoordinateComponent`.
`coordinate_links`	A list of the ComponentLinks that connect pixel and world.
`coords`	The coordinates object for the data.
`data`
`derived_components`	The ComponentIDs for each `DerivedComponent`.
`derived_links`	A list of the links present inside all of the DerivedComponent objects in this dataset.
`externally_derivable_components`
`label`	The name of the dataset
`links`	A list of all the links internal to the dataset.
`main_components`
`ndim`	The number of dimensions of the data, as an integer.
`pixel_aligned_data`	Information about other datasets in the same data collection that have matching or a subset of pixel component IDs.
`pixel_component_ids`	The `ComponentIDs` for each pixel coordinate.
`primary_components`	The ComponentIDs not associated with a `DerivedComponent`
`shape`	The n-dimensional shape of the dataset, as a tuple.
`size`	The size of the data (the product of the shape dimensions), as an integer.
`subsets`	Tuple of subsets attached to this dataset.
`visible_components`	All `ComponentIDs` in the Data that aren't coordinates.
`world_component_ids`	The `ComponentIDs` for each world coordinate.