Data Readers#
BED files#
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Read a BED file into a glue Data object. |
BigWig files#
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Read a BigWig file into a glue Data object. |
AnnData files#
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Use AnnData to read a single-cell type data file into three linked glue Data objects. |
Spaceranger output folders#
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Read in the data as an anndata object Read in the hires image Convert pixel locations Modify the obs file to have the locations |
GeoJSON files#
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OpenSlide Image Files#
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Read an OpenSlide compatible image using napari-lazy-openslide to make it look like a OME-Zarr |
OME-Zarr Image Files#
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Read an OME-Zarr file into a glue MultiResolutionData object. |
Tifffile Image Files#
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Read TIFF-like files as Zarr using tifffile |