Index

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__init__() (glue_genes.glue_genomics_data.multires_data.MultiResolutionData method) (glue_genes.glue_genomics_data.multires_data.ReducedResolutionData method) (glue_genes.glue_single_cell.data.DataAnnData method) (glue_genes.glue_single_cell.data.DataAnnDataTranslator method) (glue_genes.glue_single_cell.qt.diff_gene_exp.DifferentialGeneExpressionListener method) (glue_genes.glue_single_cell.qt.summarize_gene_subset.GeneSummaryListener method)

D

DataAnnData (class in glue_genes.glue_single_cell.data) DataAnnDataTranslator (class in glue_genes.glue_single_cell.data)

DifferentialGeneExpressionListener (class in glue_genes.glue_single_cell.qt.diff_gene_exp) do_calculation_over_gene_subset() (in module glue_genes.glue_single_cell.qt.summarize_gene_subset)

G

GeneSummaryListener (class in glue_genes.glue_single_cell.qt.summarize_gene_subset) get_gene_diff_exp() (in module glue_genes.glue_single_cell.qt.diff_gene_exp) glue_genes.glue_genomics_data.multires_data module glue_genes.glue_single_cell.data module

glue_genes.glue_single_cell.qt.diff_gene_exp module glue_genes.glue_single_cell.qt.enrichr module glue_genes.glue_single_cell.qt.summarize_gene_subset module

M

module glue_genes.glue_genomics_data.multires_data glue_genes.glue_single_cell.data glue_genes.glue_single_cell.qt.diff_gene_exp glue_genes.glue_single_cell.qt.enrichr glue_genes.glue_single_cell.qt.summarize_gene_subset

MultiResolutionData (class in glue_genes.glue_genomics_data.multires_data)

R

read_anndata() (in module glue_genes.glue_single_cell.anndata_factory) read_bed() (in module glue_genes.glue_genomics_data.bed_factory) read_bigwig() (in module glue_genes.glue_genomics_data.bigwig_factory) read_geojson() (in module glue_genes.glue_genomics_data.geojson_factory)

read_ome_zarr() (in module glue_genes.glue_genomics_data.ome_zarr_factory) read_open_slide_as_zarr() (in module glue_genes.glue_genomics_data.openslide_factory) read_spaceranger_directory() (in module glue_genes.glue_genomics_data.spaceranger_factory) read_tifffile_as_zarr() (in module glue_genes.glue_genomics_data.tifffile_factory) ReducedResolutionData (class in glue_genes.glue_genomics_data.multires_data)